Precise Estimation of Renal Vascular Dominant Regions Using Spatially Aware Fully Convolutional Networks, Tensor-Cut and Voronoi Diagrams
arXiv:1908.01543 · doi:10.1016/j.compmedimag.2019.101642
Abstract
This paper presents a new approach for precisely estimating the renal vascular dominant region using a Voronoi diagram. To provide computer-assisted diagnostics for the pre-surgical simulation of partial nephrectomy surgery, we must obtain information on the renal arteries and the renal vascular dominant regions. We propose a fully automatic segmentation method that combines a neural network and tensor-based graph-cut methods to precisely extract the kidney and renal arteries. First, we use a convolutional neural network to localize the kidney regions and extract tiny renal arteries with a tensor-based graph-cut method. Then we generate a Voronoi diagram to estimate the renal vascular dominant regions based on the segmented kidney and renal arteries. The accuracy of kidney segmentation in 27 cases with 8-fold cross validation reached a Dice score of 95%. The accuracy of renal artery segmentation in 8 cases obtained a centerline overlap ratio of 80%. Each partition region corresponds to a renal vascular dominant region. The final dominant-region estimation accuracy achieved a Dice coefficient of 80%. A clinical application showed the potential of our proposed estimation approach in a real clinical surgical environment. Further validation using large-scale database is our future work.
References in corpus (10)
- Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentation
- Brain Tumor Segmentation with Deep Neural Networks
- Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional Neural Networks and 3D Conditional Random Fields
- AnatomyNet: Deep Learning for Fast and Fully Automated Whole-volume Segmentation of Head and Neck Anatomy
- 3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation
- An application of cascaded 3D fully convolutional networks for medical image segmentation
- DeepLung: Deep 3D Dual Path Nets for Automated Pulmonary Nodule Detection and Classification
- On the influence of Dice loss function in multi-class organ segmentation of abdominal CT using 3D fully convolutional networks
- DeepEM: Deep 3D ConvNets With EM For Weakly Supervised Pulmonary Nodule Detection
- Spatial PixelCNN: Generating Images from Patches