Efficient global structure optimization with a machine learned surrogate model
arXiv:1907.05741 · doi:10.1103/PhysRevLett.124.086102
Abstract
We propose a scheme for global optimization with first-principles energy expressions (GOFEE) of atomistic structure. While unfolding its search, the method actively learns a surrogate model of the potential energy landscape on which it performs a number of local relaxations (exploitation) and further structural searches (exploration). Assuming Gaussian Processes, an acquisition function is used to decide on which of the resulting structures is the more promising. Subsequently, a single point first-principles energy calculation is conducted for that structure. The method is demonstrated to outperform by two orders of magnitude a well established first-principles based evolutionary algorithm in finding surface reconstructions. Finally, GOFEE is utilized to identify initial stages of the edge oxidation and oxygen intercalation of graphene sheets on the Ir(111) surface.
References in corpus (19)
- Gaussian Approximation Potentials: the accuracy of quantum mechanics, without the electrons
- SchNet - a deep learning architecture for molecules and materials
- Grains and grain boundaries in highly crystalline monolayer molybdenum disulfide
- ANI-1: An extensible neural network potential with DFT accuracy at force field computational cost
- Moment Tensor Potentials: a class of systematically improvable interatomic potentials
- Machine Learning of Accurate Energy-Conserving Molecular Force Fields
- Superconductive "sodalite"-like clathrate calcium hydride at high pressures
- Less is more: sampling chemical space with active learning
- Active learning of linearly parametrized interatomic potentials
- On-the-fly machine learning force field generation: Application to melting points
- Machine-learning based interatomic potential for amorphous carbon
- Active Learning of Uniformly Accurate Inter-atomic Potentials for Materials Simulation
- Data-driven learning of total and local energies in elemental boron
- Low-Scaling Algorithm for Nudged Elastic Band Calculations Using a Surrogate Machine Learning Model
- Gaussian Process Regression for Geometry Optimization
- Nudged elastic band calculations accelerated with Gaussian process regression
- Efficient Bayesian Inference of Atomistic Structure in Complex Functional Materials
- Accelerating CALYPSO Structure Prediction by Data-driven Learning of Potential Energy Surface
- A local Bayesian optimizer for atomic structures
Cited by in corpus (44)
- Combining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems
- Machine-learning interatomic potentials for materials science
- GPAW: An open Python package for electronic-structure calculations
- Perspective on integrating machine learning into computational chemistry and materials science
- Updates to the DScribe Library: New Descriptors and Derivatives
- Global optimization of atomistic structure enhanced by machine learning
- Phase Transitions of Zirconia: Machine-Learned Force Fields Beyond Density Functional Theory
- Machine-learning-accelerated simulations to enable automatic surface reconstruction
- Combining Machine Learning and Many-Body Calculations: Coverage-Dependent Adsorption of CO on Rh(111)
- Enhancing Crystal Structure Prediction by decomposition methods based on graph theory
- Global optimization of atomic structures with gradient-enhanced Gaussian process regression
- Developments and Further Applications of Ephemeral Data Derived Potentials
- Atomistic Structure Learning Algorithm with surrogate energy model relaxation
- Machine learning based approach for solving atomic structures of nanomaterials combining pair distribution functions with density functional theory
- Machine Learning and Data-Driven Methods in Computational Surface and Interface Science
- Efficient Estimation of Material Property Curves and Surfaces via Active Learning
- Atomistic structure search using local surrogate mode
- Accelerating the prediction of inorganic surfaces with machine learning interatomic potentials
- Atomic structure optimization with machine-learning enabled interpolation between chemical elements
- Machine Learning with bond information for local structure optimizations in surface science
- A machine learning potential for simulating infrared spectra of nanosilicate clusters
- Generating candidates in global optimization algorithms using complementary energy landscapes
- Surface Phase Diagrams from Nested Sampling
- Accelerated Bayesian Inference for Molecular Simulations using Local Gaussian Process Surrogate Models
- Prediction of surface reconstructions using MAGUS
- Cascading symmetry constraint during machine learning-enabled structural search for sulfur induced Cu(111)- surface reconstruction
- Machine learning potentials for complex aqueous systems made simple
- Machine-learning enabled optimization of atomic structures using atoms with fractional existence
- Efficient moment tensor machine-learning interatomic potential for accurate description of defects in Ni-Al Alloys
- -model correction of Foundation Model based on the models own understanding
- Efficient ensemble uncertainty estimation in Gaussian Processes Regression
- Accelerating structure search using atomistic graph-based classifiers
- Accelerated lignocellulosic molecule adsorption structure determination
- Towards interpreting ML-based automated malware detection models: a survey
- Efficient Cysteine Conformer Search with Bayesian Optimization
- Dimerization of dehydrogenated polycyclic aromatic hydrocarbons on graphene
- Water Nucleation via Transient Bonds to Oxygen Functionalized Graphite
- RAFFLE: Active learning accelerated interface structure prediction
- Entropy-based Active Learning of Graph Neural Network Surrogate Models for Materials Properties
- Atomistic Global Optimization X: A Python package for optimization of atomistic structures
- Active Δ-learning with universal potentials for global structure optimization
- Anharmonic infrared spectra of cationic pyrene and superhydrogenated derivatives
- Iterative learning scheme for crystal structure prediction with anharmonic lattice dynamics
- Gradient-based grand canonical optimization enabled by graph neural networks with fractional atomic existence