Bending models of lipid bilayer membranes: spontaneous curvature and area-difference elasticity
arXiv:1905.00240 · doi:10.1016/j.cma.2019.112758
Abstract
We preset a computational study of bending models for the curvature elasticity of lipid bilayer membranes that are relevant for simulations of vesicles and red blood cells. We compute bending energy and forces on triangulated meshes and evaluate and extend four well established schemes for their approximation: Kantor and Nelson 1987, Phys. Rev. A 36, 4020, Jülicher 1996, J. Phys. II France 6, 1797, Gompper and Kroll 1996, J. Phys. I France 6, 1305, and Meyer et. al. 2003 in Visualization and Mathematics III, Springer, p35, termed A, B, C, D. We present a comparative study of these four schemes on the minimal bending model and propose extensions for schemes B, C and D. These extensions incorporate the reference state and non-local energy to account for the spontaneous curvature, bilayer coupling, and area-difference elasticity models. Our results indicate that the proposed extensions enhance the models to account for shape transformation including budding/vesiculation as well as for non-axisymmetric shapes. We find that the extended scheme B is superior to the rest in terms of accuracy, and robustness as well as simplicity of implementation. We demonstrate the capabilities of this scheme on several benchmark problems including the budding-vesiculating process and the reproduction of the phase diagram of vesicles.
References in corpus (1)
Cited by in corpus (13)
- Buckling, Crumpling, and Tumbling of Semiflexible Sheets in Simple Shear Flow
- Lattice Boltzmann simulation of deformable fluid-filled bodies: progress and perspectives
- Radial dynamics of an encapsulated microbubble with interface energy
- Modeling mechanochemical pattern formation in elastic sheets of biological matter
- The stress-free state of human erythrocytes: data driven inference of a transferable RBC model
- The Volume of Healthy Red Blood Cells is Optimal for Advective Oxygen Transport in Arterioles
- Mem3DG: Modeling Membrane Mechanochemical Dynamics in 3D using Discrete Differential Geometry
- Coarse-grained curvature tensor on polygonal surfaces
- A tutorial for mesoscale computer simulations of lipid membranes: tether pulling, tubulation and fluctuation
- Numerical shape optimization of the Canham-Helfrich-Evans bending energy
- Cell-Scale Dynamic Modeling of Membrane Interactions with Arbitrarily Shaped Particles
- Stability of branched tubular membrane structures
- Measuring the mechanical properties of asymmetric membranes in computer simulations -- new methods and insights