Comparison of Modern Langevin Integrators for Simulations of Coarse-Grained Polymer Melts
arXiv:1904.00532 · doi:10.1080/00268976.2019.1649493
Abstract
For a wide range of phenomena, current computational ability does not always allow for fully atomistic simulations of high-dimensional molecular systems to reach time scales of interest. Coarse-graining (CG) is an established approach to alleviate the impact of computational limits while retaining the same algorithms used in atomistic simulations. It is of importance to understand how algorithms such as Langevin integrators perform on non-trivial CG molecular systems, and in particular how large of an integration time step can be used without introducing unacceptable amounts of error into averaged quantities of interest. To investigate this, we examined three different Langevin integrators on a CG polymer melt: the recently developed BAOAB method by Leimkuhler and Matthews, the Gronbech-Jensen and Farago method, or G-JF, and the frequently used Brunger-Brooks-Karplus integrator, also known as BBK. We compute and analyze key statistical properties for each. Our results indicate that the three integrators perform similarly when using a small friction parameter; however, outside of this regime the use of large integration steps produces significant deviations from the predicted diffusivity and steady-state distributions for all integration methods examined with the exception of G-JF.
arXiv comment20 pages, 7 figures
References in corpus (10)
- Efficient tunable generic model for fluid bilayer membranes
- A simple and effective Verlet-type algorithm for simulating Langevin dynamics
- Robust and efficient configurational molecular sampling via Langevin Dynamics
- Resolving Dynamic Properties of Polymers through Coarse-Grained Computational Studies
- Application of the G-JF Discrete-Time Thermostat for Fast and Accurate Molecular Simulations
- Langevin thermostat for robust configurational and kinetic sampling
- Accurate Configurational and Kinetic Statistics in Discrete-Time Langevin Systems
- Assessing numerical methods for molecular and particle simulation
- The G-JF Thermostat for Accurate Configurational Sampling in Soft-Matter Simulations
- General order conditions for stochastic partitioned Runge-Kutta methods
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