Efficient construction of linear models in materials modeling and applications to force constant expansions
arXiv:1902.01271 · doi:10.1038/s41524-020-00404-5
Abstract
Linear models, such as force constant (FC) and cluster expansions, play a key role in physics and materials science. While they can in principle be parametrized using regression and feature selection approaches, the convergence behavior of these techniques, in particular with respect to thermodynamic properties is not well understood. Here, we therefore analyze the efficacy and efficiency of several state-of-the-art regression and feature selection methods, in particular in the context of FC extraction and the prediction of different thermodynamic properties. Generic feature selection algorithms such as recursive feature elimination with ordinary least-squares (OLS), automatic relevance determination regression, and the adaptive least absolute shrinkage and selection operator can yield physically sound models for systems with a modest number of degrees of freedom. For large unit cells with low symmetry and/or high-order expansions they come, however, with a non-negligible computational cost that can be more than two orders of magnitude higher than that of OLS. In such cases, OLS with cutoff selection provides a viable route as demonstrated here for both second-order FCs in large low-symmetry unit cells and high-order FCs in low-symmetry systems. While regression techniques are thus very powerful, they require well-tuned protocols. Here, the present work establishes guidelines for the design of protocols that are readily usable, e.g., in high-throughput and materials discovery schemes. Since the underlying algorithms are not specific to FC construction, the general conclusions drawn here also have a bearing on the construction of other linear models in physics and materials science.
arXiv comment15 pages, 12 figures
References in corpus (25)
- Van der Waals Density Functional for General Geometries
- Van der Waals density functionals applied to solids
- Distribution of phonon lifetime in Brillouin zone
- Heat transport in silicon from first principles calculations
- Lattice dynamics of anharmonic solids from first principles
- Temperature dependent effective potential method for accurate free energy calculations of solids
- Self-consistent phonon calculations of lattice dynamical properties in cubic SrTiO with first-principles anharmonic force constants
- An exchange functional that tests the robustness of the plasmon description of the van der Waals density functional
- The hiphive package for the extraction of high-order force constants by machine learning
- Temperature dependent effective third order interatomic force constants from first principles
- Anharmonic free energies and phonon dispersions from the stochastic self-consistent harmonic approximation: application to platinum and palladium hydrides
- Lattice anharmonicity and thermal conductivity from compressive sensing of first-principles calculations
- First-principles theory of the luminescence lineshape for the triplet transition in diamond NV centre
- almaBTE: a solver of the space-time dependent Boltzmann transport equation for phonons in structured materials
- icet - A Python library for constructing and sampling alloy cluster expansions
- Compressive sensing as a new paradigm for model building
- Quartic Anharmonicity of Rattlers and Its Effect on Lattice Thermal Conductivity of Clathrates from First Principles
- First-Principles Lattice Dynamics Method for Strongly Anharmonic Crystals
- Compressive sensing lattice dynamics. II. Efficient phonon calculations and long-range interactions
- Compressive sensing lattice dynamics. I. General formalism
- Exceptionally strong phonon scattering by B substitution in cubic SiC
- Cluster expansion made easy with Bayesian compressive sensing
- Local vibrational modes of Si vacancy spin qubits in SiC
- Effect of local chemistry and structure on thermal transport in doped GaAs
- Thermal conductivity in intermetallic clathrates: A first principles perspective
Cited by in corpus (4)
- First-Principles Phonon Quasiparticle Theory Applied to a Strongly Anharmonic Halide Perovskite
- DYNASOR -- A tool for extracting dynamical structure factors and current correlation functions from molecular dynamics simulations
- Construction and sampling of alloy cluster expansions -- A tutorial
- Quantitative predictions of the thermal conductivity in transition metal dichalcogenides: The impact of point defects in MoS and WS monolayers