Classification of crystallization outcomes using deep convolutional neural networks
arXiv:1803.10342 · doi:10.1371/journal.pone.0198883
Abstract
The Machine Recognition of Crystallization Outcomes (MARCO) initiative has assembled roughly half a million annotated images of macromolecular crystallization experiments from various sources and setups. Here, state-of-the-art machine learning algorithms are trained and tested on different parts of this data set. We find that more than 94% of the test images can be correctly labeled, irrespective of their experimental origin. Because crystal recognition is key to high-density screening and the systematic analysis of crystallization experiments, this approach opens the door to both industrial and fundamental research applications.
11 pages, 4 figures, minor text and figure updates
References in corpus (9)
- A Survey on Deep Learning in Medical Image Analysis
- TensorFlow: Large-Scale Machine Learning on Heterogeneous Distributed Systems
- SmoothGrad: removing noise by adding noise
- Domain Separation Networks
- Grader variability and the importance of reference standards for evaluating machine learning models for diabetic retinopathy
- Detecting Cancer Metastases on Gigapixel Pathology Images
- Soft Matter Perspective on Protein Crystal Assembly
- Statistical analysis of crystallization database links protein physico-chemical features with crystallization mechanisms
- Computational Crystallization
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