A multilayer PPI network analysis of different life stages in C. elegans
arXiv:1602.08314 · doi:10.1209/0295-5075/112/58001
Abstract
Molecular networks act as the backbone of cellular activities, providing an {excellent} opportunity to understand the developmental changes in an organism. While network data usually constitute only stationary network graphs, constructing multilayer PPI network may provide clues to the particular developmental role at each {stage of life} and may unravel the importance of these developmental changes. The developmental biology model of {Caenorhabditis elegans} {analyzed} here provides a ripe platform to understand the patterns of evolution during life stages of an organism. In the present study, the widely studied network properties exhibit overall similar statistics for all the PPI layers. Further, the analysis of the degree-degree correlation and spectral properties not only reveals crucial differences in each PPI layer but also indicates the presence of the varying complexity among them. The PPI layer of Nematode life stage exhibits various network properties different to rest of the PPI layers, indicating the specific role of cellular diversity and developmental transitions at this stage. The framework presented here provides a direction to explore and understand developmental changes occurring in different life stages of an organism.
References in corpus (19)
- Statistical mechanics of complex networks
- Mixing patterns in networks
- Heterogeneity in oscillator networks: Are smaller worlds easier to synchronize?
- Evolutionary games on multilayer networks: A colloquium
- Layer aggregation and reducibility of multilayer interconnected networks
- Analysis of a large-scale weighted network of one-to-one human communication
- Duplication-divergence model of protein interaction network
- The Shannon and the Von Neumann entropy of random networks with heterogeneous expected degree
- The laplacian of a graph as a density matrix: a basic combinatorial approach to separability of mixed states
- The entropic origin of disassortativity in complex networks
- Spectral Analysis and the Dynamic Response of Complex Networks
- Random matrix analysis of localization properties of Gene co-expression network
- Universality in the spectral and eigenfunction properties of random networks
- Randomness and preserved patterns in cancer network
- Spectral Analysis of Protein-Protein Interactions in Drosophila melanogaster
- Spectral transitions in networks
- Quantifying randomness in protein-protein interaction networks of different species: A random matrix approach
- Origin and implications of zero degeneracy in networks spectra
- Two universal physical principles shape the power-law statistics of real-world networks
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- Inter-layer adaptation induced explosive synchronization in multiplex networks
- Multiplexing induced explosive synchronization in Kuramoto oscillators with inertia
- Localization of multilayer networks by the optimized single-layer rewiring
- Interplay of Delay and multiplexing: Impact on Cluster Synchronization
- Taming Chimeras in Networks through Multiplexing Delays