The Raspberry Model for Hydrodynamic Interactions Revisited. I. Periodic Arrays of Spheres and Dumbbells
arXiv:1503.02671 · doi:10.1063/1.4928502
Abstract
The so-called 'raspberry' model refers to the hybrid lattice-Boltzmann and Langevin molecular dynamics scheme for simulating the dynamics of suspensions of colloidal particles, originally developed by [V. Lobaskin and B. Dünweg, New J. Phys. 6, 54 (2004)], wherein discrete surface points are used to achieve fluid-particle coupling. This technique has been used in many simulation studies on the behavior of colloids. However, there are fundamental questions with regards to the use of this model. In this paper, we examine the accuracy with which the raspberry method is able to reproduce Stokes-level hydrodynamic interactions when compared to analytic expressions for solid spheres in simple-cubic crystals. To this end, we consider the quality of numerical experiments that are traditionally used to establish these properties and we discuss their shortcomings. We show that there is a discrepancy between the translational and rotational mobility reproduced by the simple raspberry model and present a way to numerically remedy the problem by adding internal coupling points. Finally, we examine a non-convex shape, namely a colloidal dumbbell, and show that the filled raspberry model replicates the desired hydrodynamic behavior in bulk for this more complicated shape. Our investigation is continued in [J. de Graaf, et al., J. Chem. Phys. 143, 084107 (2015)], wherein we consider the raspberry model in the confining geometry of two parallel plates.
arXiv comment25 pages, 11 figures
References in corpus (23)
- Numerical Simulations of Particulate Suspensions via a Discretized Boltzmann Equation Part I. Theoretical Foundation
- Optical alignment and spinning of laser-trapped microscopic particles
- Hydrodynamic interactions and Brownian forces in colloidal suspensions: Coarse-graining over time and length-scales
- Simulation of a Single Polymer Chain in Solution by Combining Lattice Boltzmann and Molecular Dynamics
- Lattice Boltzmann simulations of soft matter systems
- Fluctuating lattice Boltzmann
- Statistical Mechanics of the Fluctuating Lattice Boltzmann Equation
- Electrophoresis of colloidal dispersions in the low-salt regime
- A new model for simulating colloidal dynamics
- Brownian motion and the hydrodynamic friction tensor for colloidal particles of complex shape
- Combining Molecular Dynamics with Lattice-Boltzmann: A Hybrid Method for the Simulation of (Charged) Colloidal Systems
- The Stokes-Einstein Relation at Moderate Schmidt Number
- Brownian dynamics of a microswimmer
- A unified operator splitting approach for multi-scale fluid-particle coupling in the lattice Boltzmann method
- The Raspberry Model for Hydrodynamic Interactions Revisited. II. The Effect of Confinement
- Progress in the Understanding of the Fluctuating Lattice Boltzmann Equation
- Backtracking of colloids: a multiparticle collision dynamics simulation study
- Hydrodynamic forces on steady and oscillating porous particles
- AC-field-induced Polarization for Uncharged Colloids in Salt Solution: A Dissipative Particle Dynamics Simulation
- Hydrodynamics of confined colloidal fluids in two dimensions
- Coarse-graining dynamics by telescoping down time-scales: comment for Faraday FD144
- No free lunch for effective potentials: general comment for Faraday FD144
- Velocity relaxation of a porous sphere immersed in a viscous incompressible fluid
Cited by in corpus (18)
- ESPResSo 4.0 -- An Extensible Software Package for Simulating Soft Matter Systems
- Lattice Boltzmann Methods and Active Fluids
- Lattice-Boltzmann Hydrodynamics of Anisotropic Active Matter
- Understanding the Onset of Oscillatory Swimming in Microchannels
- The Raspberry Model for Hydrodynamic Interactions Revisited. II. The Effect of Confinement
- An extensible lattice Boltzmann method for viscoelastic flows: complex and moving boundaries in Oldroyd-B fluids
- Diffusion and sedimentation in colloidal suspensions using multiparticle collision dynamics with a discrete particle model
- Moving Charged Particles in Lattice Boltzmann-Based Electrokinetics
- Frequency-dependent magnetic susceptibility of magnetic nanoparticles in a polymer solution: a simulation study
- Electrophoresis of Janus Particles: a Molecular Dynamics simulation study
- Limiting Spurious Flow in Simulations of Electrokinetic Phenomena
- Lattice-Boltzmann Simulations of Microswimmer-Tracer Interactions
- A Computational Model for Bacterial Run-and-Tumble Motion
- The Raspberry model for protein-like particles: ellipsoids and confinement in cylindrical pores
- Capture and translocation of a rod-like molecule by a nanopore: orientation, charge distribution and hydrodynamics
- Colloidal suspensions of C-particles: Entanglement, percolation and microrheology
- Diffusion of single active-dipolar cubes in applied fields
- An empirical method to characterize displacement distribution functions for anomalous and transient diffusion