Pairwise alignment of the DNA sequence using hypercomplex number representation
arXiv:1403.2658 · doi:10.1016/j.bulm.2004.01.005
Abstract
A new set of DNA base-nucleic acid codes and their hypercomplex number representation have been introduced for taking the probability of each nucleotide into full account. A new scoring system has been proposed to suit the hypercomplex number representation of the DNA base-nucleic acid codes and incorporated with the method of dot matrix analysis and various algorithms of sequence alignment. The problem of DNA sequence alignment can be processed in a rather similar way as pairwise alignment of protein sequence.
Cited by in corpus (9)
- Fourier-based classification of protein secondary structures
- Hypercomplex cross-correlation of DNA sequences
- An improved scoring matrix for multiple sequence alignment
- The genetic code, 8-dimensional hypercomplex numbers and dyadic shifts
- Predicting potential SARS-CoV-2 spillover and spillback in animals
- A statistical thin-tail test of predicting regulatory regions in the Drosophila genome
- A statistical fat-tail test of predicting regulatory regions in the Drosophila genome
- Identifying DNA motifs based on match and mismatch alignment information
- On a novel 3D hypercomplex number system