Twist neutrality, a zero sum rule for oriented closed space curves with applications to circular DNA
arXiv:1301.1335 · doi:10.1103/PhysRevE.88.052714
Abstract
The interplay between global constraints and local material properties of chain molecules is a subject of emerging interest. Studies of molecules that are intrinsically chiral, such as double-stranded DNA, is one example. Their properties generally depend on the local geometry, i.e. on curvature and torsion, yet the paths of closed molecules are globally restricted by topology. Molecules that fulfill a twist neutrality condition, a zero sum rule for the incremental change in the rate of winding along the curve, will behave neutrally to strain. This has implications for plasmids. For small circular microDNAs it follows that there must exist a minimum length for these to be double-stranded. It also follows that all microDNAs longer than the minimum length must be concave. This counterintuitive result is consistent with the kink-like appearance which has been observed for circular DNA. A prediction for the total negative curvature of a circular microDNA is given as a function of its length.
6 pages, 1 figure; v2: references added;v3: a crucial mistake in Eq. (8) of v2 has been corrected, and the conclusions changed accordingly
References in corpus (8)
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