3.9k citations
- University of California, BerkeleyUS33 papers
- Lawrence Berkeley National LaboratoryUS11 papers
- University of California, San FranciscoUS9 papers
- Howard Hughes Medical InstituteUS5 papers
- Stanford UniversityUS5 papers
- Biologie Computationnelle, Quantitative et SynthétiqueFR3 papers
- University of California, Los AngelesUS3 papers
- University of Maryland, College ParkUS3 papers
- University of Southern CaliforniaUS3 papers
- Yale UniversityUS3 papers
- Argonne National LaboratoryUS2 papers
- Carnegie Mellon UniversityUS2 papers
4 papers · 1 filter
Reconstructing Noisy Gene Regulation Dynamics Using Extrinsic-Noise-Driven Neural Stochastic Differential Equations
Jiancheng Zhang, Xiangting Li, Xiaolu Guo +6
Proper regulation of cell signaling and gene expression is crucial for maintaining cellular function, development, and adaptation to environmental changes. Reaction dynamics in cel…
Mapping Differential Protein-Protein Interaction Networks using Affinity Purification Mass Spectrometry
Prashant Kaushal, Manisha R. Ummadi, Gwendolyn M. Jang +14
Proteins congregate into complexes to perform fundamental cellular functions. Phenotypic outcomes, in health and disease, are often mechanistically driven by the remodeling of prot…
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Yuxiang Jiang, Tal Ronnen Oron, Wyatt T Clark +144
Background: The increasing volume and variety of genotypic and phenotypic data is a major defining characteristic of modern biomedical sciences. At the same time, the limitations i…
RNA structure characterization from chemical mapping experiments
Sharon Aviran, Julius B. Lucks, Lior Pachter
Despite great interest in solving RNA secondary structures due to their impact on function, it remains an open problem to determine structure from sequence. Among experimental appr…