output
20072026
most citedSciPy 1.0--Fundamental Algorithms for Scientific Computing in Python

40.2k citations

36 papers

cs.LG2026

Graph-Based Approaches to Learning Epileptogenic Zone Localization Using Stereo-EEG Recordings

Daniel Wendelken, Brian Ervin, Ravindra Arya +1

The epileptogenic zone (EZ) is the brain region that generates seizures in an individual, and is the target of epilepsy surgery. Localizing the EZ from stereo-EEG (sEEG) recordings…

q-bio.NC2026

Computer Vision Based Neurology Brain Activity Rejection Architecture and Implementation

Zag ElSayed, Nathan Suer, Grace Westerkamp +4

The electroencephalogram (EEG) is a valuable and widely applied tool for investigating brain disorders and behavioral changes. It offers a minimally restrictive and non-invasive me…

stat.ME2025★ 1 cited

A Bayesian location-scale joint model for time-to-event and multivariate longitudinal data with association based on within-individual variability

Marco Palma, Ruth H Keogh, Siobhán B Carr +5

Within-individual variability of health indicators measured over time is becoming commonly used to inform about disease progression. Simple summary statistics (e.g. the standard de…

cs.CY2024★ 10 cited

Environment Scan of Generative AI Infrastructure for Clinical and Translational Science

Betina Idnay, Zihan Xu, William G. Adams +54

This study reports a comprehensive environmental scan of the generative AI (GenAI) infrastructure in the national network for clinical and translational science across 36 instituti…

eess.IV2024★ 14 cited

BraTS-PEDs: Results of the Multi-Consortium International Pediatric Brain Tumor Segmentation Challenge 2023

Anahita Fathi Kazerooni, Nastaran Khalili, Xinyang Liu +77

Pediatric central nervous system tumors are the leading cause of cancer-related deaths in children. The five-year survival rate for high-grade glioma in children is less than 20%.…

stat.ME2024★ 1 cited

A joint model for (un)bounded longitudinal markers, competing risks, and recurrent events using patient registry data

Pedro Miranda Afonso, Dimitris Rizopoulos, Anushka K. Palipana +5

Joint models for longitudinal and survival data have become a popular framework for studying the association between repeatedly measured biomarkers and clinical events. Nevertheles…

cs.CV2024★ 6 cited

RadCLIP: Enhancing Radiologic Image Analysis through Contrastive Language-Image Pre-training

Zhixiu Lu, Hailong Li, Nehal A. Parikh +2

The integration of artificial intelligence (AI) with radiology marks a transformative era in medicine. Vision foundation models have been adopted to enhance radiologic imaging anal…

eess.IV2023★ 9 cited

Joint Self-Supervised and Supervised Contrastive Learning for Multimodal MRI Data: Towards Predicting Abnormal Neurodevelopment

Zhiyuan Li, Hailong Li, Anca L. Ralescu +5

The integration of different imaging modalities, such as structural, diffusion tensor, and functional magnetic resonance imaging, with deep learning models has yielded promising ou…

astro-ph.IM2023★ 1 cited

Accelerating and scaling mentoring strategies to build infrastructure that supports underrepresented groups in STEM

2030STEM Collaboration, Jennifer D. Adams, David Asai +13

The vision of 2030STEM is to address systemic barriers in institutional structures and funding mechanisms required to achieve full inclusion in Science, Technology, Engineering, an…

eess.IV2023★ 15 cited

A Novel Collaborative Self-Supervised Learning Method for Radiomic Data

Zhiyuan Li, Hailong Li, Anca L. Ralescu +3

The computer-aided disease diagnosis from radiomic data is important in many medical applications. However, developing such a technique relies on annotating radiological images, wh…

cs.LG2022★ 106 cited

Federated learning: Applications, challenges and future directions

Subrato Bharati, M. Rubaiyat Hossain Mondal, Prajoy Podder +1

Federated learning (FL) is a system in which a central aggregator coordinates the efforts of multiple clients to solve machine learning problems. This setting allows training data…

cs.LG2022★ 7 cited

A Novel Ontology-guided Attribute Partitioning Ensemble Learning Model for Early Prediction of Cognitive Deficits using Quantitative Structural MRI in Very Preterm Infants

Zhiyuan Li, Hailong Li, Adebayo Braimah +3

Structural magnetic resonance imaging studies have shown that brain anatomical abnormalities are associated with cognitive deficits in preterm infants. Brain maturation and geometr…

eess.IV2021★ 17 cited

Dynamic imaging using Motion-Compensated SmooThness Regularization on Manifolds (MoCo-SToRM)

Qing Zou, Luis A. Torres, Sean B. Fain +3

We introduce an unsupervised motion-compensated reconstruction scheme for high-resolution free-breathing pulmonary MRI. We model the image frames in the time series as the deformed…

cs.SI2021★ 19 cited

Measuring information exchange and brokerage capacity of healthcare teams

F. Grippa, J. Bucuvalas, A. Booth +3

Purpose: The purpose of this paper is to explore possible factors impacting team performance in healthcare, by focusing on information exchange within and across hospital's boundar…

cs.DC2021★ 3 cited

Fast Nonblocking Persistence for Concurrent Data Structures

Wentao Cai, Haosen Wen, Vladimir Maksimovski +4

We present a fully lock-free variant of the recent Montage system for persistent data structures. Our variant, nbMontage, adds persistence to almost any nonblocking concurrent stru…

cs.CL2020★ 1 cited

Deep Learning Approach for Enhanced Cyber Threat Indicators in Twitter Stream

Simran K, Prathiksha Balakrishna, Vinayakumar R +1

In recent days, the amount of Cyber Security text data shared via social media resources mainly Twitter has increased. An accurate analysis of this data can help to develop cyber t…

cs.CL2020★ 1 cited

Deep Learning Approach for Intelligent Named Entity Recognition of Cyber Security

Simran K, Sriram S, Vinayakumar R +1

In recent years, the amount of Cyber Security data generated in the form of unstructured texts, for example, social media resources, blogs, articles, and so on has exceptionally in…

stat.AP2019★ 5 cited

Source-specific contributions of particulate matter to asthma-related pediatric emergency department utilization

Mohammad Alfrad Nobel Bhuiyan, Patrick Ryan, Farzan Oroumyeh +4

Few studies have linked specific sources of ambient particulate matter smaller than 2.5 m (PM2.5) and asthma. In this study, we estimated the contributions of specific sources t…

stat.ME2019★ 1 cited

Bayesian Shape Invariant Model for Latent Growth Curve with Time-Invariant Covariates

Mohammad Alfrad Nobel Bhuiyan, Heidi Sucharew, Rhonda Szczesniak +4

In the attention-deficit hyperactivity disorder (ADHD) study, children are prescribed different stimulant medications. The height measurements are recorded longitudinally along wit…

stat.ME2019

Efficiency of Observed Information Adaptive Designs

Adam Lane

In this work the primary objective is to maximize the precision of the maximum likelihood estimate in a linear regression model through the efficient design of the experiment. One…

q-bio.GN2019★ 54 cited

Guidelines for reporting single-cell RNA-Seq experiments

Anja Füllgrabe, Nancy George, Matthew Green +16

Single-cell RNA-Sequencing (scRNA-Seq) has undergone major technological advances in recent years, enabling the conception of various organism-level cell atlassing projects. With i…

stat.ME2019★ 3 cited

Conditional Information and Inference in Response-Adaptive Allocation Designs

Adam Lane

Response-adaptive allocation designs refer to a class of designs where the probability an observation is assigned to a treatment is changed throughout an experiment based on the ac…

cs.MS2019★ 40.2k cited

SciPy 1.0--Fundamental Algorithms for Scientific Computing in Python

Pauli Virtanen, Ralf Gommers, Travis E. Oliphant +32

SciPy is an open source scientific computing library for the Python programming language. SciPy 1.0 was released in late 2017, about 16 years after the original version 0.1 release…

stat.ME2019★ 2 cited

GPMatch: A Bayesian Doubly Robust Approach to Causal Inference with Gaussian Process Covariance Function As a Matching Tool

Bin Huang, Chen Chen, Jinzhong Liu

Gaussian process (GP) covariance function is proposed as a matching tool in GPMatch within a full Bayesian framework under relatively weaker causal assumptions. The matching is acc…