output
20162020
most citedPEtab -- interoperable specification of parameter estimation problems in systems biology

112 citations

7 papers

stat.CO2020★ 16 cited

Fast computation of latent correlations

Grace Yoon, Christian L. Müller, Irina Gaynanova

Latent Gaussian copula models provide a powerful means to perform multi-view data integration since these models can seamlessly express dependencies between mixed variable types (b…

q-bio.QM2020★ 112 cited

PEtab -- interoperable specification of parameter estimation problems in systems biology

Leonard Schmiester, Yannik Schälte, Frank T. Bergmann +26

Reproducibility and reusability of the results of data-based modeling studies are essential. Yet, there has been -- so far -- no broadly supported format for the specification of p…

stat.CO2018★ 5 cited

Bayesian Inference for Diffusion Processes: Using Higher-Order Approximations for Transition Densities

Susanne Pieschner, Christiane Fuchs

Modelling random dynamical systems in continuous time, diffusion processes are a powerful tool in many areas of science. Model parameters can be estimated from time-discretely obse…

math.NA2018★ 11 cited

Smoothing for signals with discontinuities using higher order Mumford-Shah models

Martin Storath, Lukas Kiefer, Andreas Weinmann

Minimizing the Mumford-Shah functional is frequently used for smoothing signals or time series with discontinuities. A significant limitation of the standard Mumford-Shah model is…

math.NA2017★ 32 cited

Total Generalized Variation for Manifold-valued Data

K. Bredies, M. Holler, M. Storath +1

In this paper we introduce the notion of second-order total generalized variation (TGV) regularization for manifold-valued data in a discrete setting. We provide an axiomatic appro…

cs.CV2017★ 31 cited

Model-based learning of local image features for unsupervised texture segmentation

Martin Kiechle, Martin Storath, Andreas Weinmann +1

Features that capture well the textural patterns of a certain class of images are crucial for the performance of texture segmentation methods. The manual selection of features or d…

math.NA2016★ 18 cited

Integration based profile likelihood calculation for PDE constrained parameter estimation problems

Romana Boiger, Jan Hasenauer, Sabrina Hross +1

Partial differential equation (PDE) models are widely used in engineering and natural sciences to describe spatio-temporal processes. The parameters of the considered processes are…