443 citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- University of ŁódźPL34 papers
- Institute of MathematicsPL24 papers
- Instituto Politécnico NacionalMX15 papers
- Jagiellonian UniversityPL14 papers
- Centre National de la Recherche ScientifiqueFR13 papers
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico NacionalMX11 papers
- Indian Statistical InstituteIN11 papers
- Istituto Nazionale di Fisica Nucleare, Laboratori Nazionali del Gran SassoIT11 papers
- Istituto Nazionale di Fisica Nucleare, Sezione di Roma IIT11 papers
- European Organization for Nuclear ResearchCH10 papers
- Gran Sasso Science InstituteIT10 papers
- Institute of PhysicsPL10 papers
5 papers · 2 filters
A note on the longest common substring with -mismatches problem
Szymon Grabowski
The recently introduced longest common substring with -mismatches (-LCF) problem is to find, given two sequences and of length each, a longest substring …
KMC 2: Fast and resource-frugal -mer counting
Sebastian Deorowicz, Marek Kokot, Szymon Grabowski +1
Motivation: Building the histogram of occurrences of every -symbol long substring of nucleotide data is a standard step in many bioinformatics applications, known under the name…
Sampling the suffix array with minimizers
Szymon Grabowski, Marcin Raniszewski
Sampling (evenly) the suffixes from the suffix array is an old idea trading the pattern search time for reduced index space. A few years ago Claude et al. showed an alphabet sampli…
Multiple pattern matching revisited
Robert Susik, Szymon Grabowski, Kimmo Fredriksson
We consider the classical exact multiple string matching problem. Our solution is based on -grams combined with pattern superimposition, bit-parallelism and alphabet size reduct…
Two simple full-text indexes based on the suffix array
Szymon Grabowski, Marcin Raniszewski
We propose two suffix array inspired full-text indexes. One, called SA-hash, augments the suffix array with a hash table to speed up pattern searches due to significantly narrowed…