1.5k citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- Johannes Gutenberg University MainzDE6 papers
- University of SheffieldGB4 papers
- University of HelsinkiFI3 papers
- University of OxfordGB3 papers
- Aarhus UniversityDK2 papers
- Center for Integrated Protein Science MunichDE2 papers
- Center for NanoScienceDE2 papers
- Centre National de la Recherche ScientifiqueFR2 papers
- Columbia UniversityUS2 papers
- Delft University of TechnologyNL2 papers
- Hasselt UniversityBE2 papers
- Heinrich Heine University DüsseldorfDE2 papers
9 papers
Sol-gel transition in heteroassociative RNA-protein solutions: A quantitative comparison of coarse-grained simulations and the Semenov-Rubinstein theory
Xinxiang Chen, Jude Ann Vishnu, Pol Besenius +2
Protein RNA-binding domains selectively interact with specific RNA sites, a key interaction that determines the emergent cooperative behaviors in RNA-protein mixtures. Through mole…
Data-based stochastic modeling reveals sources of activity bursts in single-cell TGF- signaling
Niklas Kolbe, Lorenz Hexemer, Lukas-Malte Bammert +3
Cells sense their surrounding by employing intracellular signaling pathways that transmit hormonal signals from the cell membrane to the nucleus. TGF-/SMAD signaling encodes var…
Mathematical and Computer Modeling of COVID-19 Transmission Dynamics in Bulgaria by Time-depended Inverse SEIR Model
Svetozar Margenov, Nedyu Popivanov, Iva Ugrinova +2
In this paper we explore a time-depended SEIR model, in which the dynamics of the infection in four groups from a selected target group (population), divided according to the infec…
The FRET-based structural dynamics challenge -- community contributions to consistent and open science practices
Eitan Lerner, Benjamin Ambrose, Anders Barth +23
Single-molecule Förster resonance energy transfer (smFRET) has become a mainstream technique for probing biomolecular structural dynamics. The rapid and wide adoption of the techni…
Precision and accuracy of single-molecule FRET measurements - a worldwide benchmark study
Björn Hellenkamp, Sonja Schmid, Olga Doroshenko +50
Single-molecule Förster resonance energy transfer (smFRET) is increasingly being used to determine distances, structures, and dynamics of biomolecules in vitro and in vivo. However…
Genome-wide modelling of transcription kinetics reveals patterns of RNA production delays
Antti Honkela, Jaakko Peltonen, Hande Topa +7
Genes with similar transcriptional activation kinetics can display very different temporal mRNA profiles due to differences in transcription time, degradation rate and RNA processi…
Numerical study of cancer cell invasion dynamics using adaptive mesh refinement: the urokinase model
Niklas Kolbe, Jana Katuchova, Nikolaos Sfakianakis +2
In the present work we investigate the chemotactically and proteolytically driven tissue invasion by cancer cells. The model employed is a system of advection-reaction-diffusion eq…
Ancient human genomes suggest three ancestral populations for present-day Europeans
Iosif Lazaridis, Nick Patterson, Alissa Mittnik +117
We sequenced genomes from a 7,000 year old early farmer from Stuttgart in Germany, an 8,000 year old hunter-gatherer from Luxembourg, and seven 8,000 year old hun…
Inference of RNA Polymerase II Transcription Dynamics from Chromatin Immunoprecipitation Time Course Data
Ciira wa Maina, Antti Honkela, Filomena Matarese +5
Gene transcription mediated by RNA polymerase II (pol-II) is a key step in gene expression. The dynamics of pol-II moving along the transcribed region influence the rate and timing…