6 citations
3 papers
cs.LG2026
Task- and dataset-specific information in protein language models
Roman Joeres, Ilya Senatorov, Anastasia Kolchina +2
Protein language models (PLMs) have transferred the latest advances from natural language processing to computational biology. These models, trained on large corpora of protein seq…
q-bio.OT2025★ 6 cited
MCPmed: A Call for MCP-Enabled Bioinformatics Web Services for LLM-Driven Discovery
Matthias Flotho, Ian Ferenc Diks, Philipp Flotho +3
Bioinformatics web servers are critical resources in modern biomedical research, facilitating interactive exploration of datasets through custom-built interfaces with rich visualiz…
q-bio.QM2024★ 1 cited
Diceplot: A package for high dimensional categorical data visualization
Matthias Flotho, Philipp Flotho, Andreas Keller
Visualization of multidimensional, categorical data is a common challenge across scientific areas and, in particular, the life sciences. The goal is to create a comprehensive overv…