40.2k citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- Stanford UniversityUS6 papers
- University of California, BerkeleyUS5 papers
- Harvard UniversityUS3 papers
- Instituto de Biocomputación y Física de Sistemas Complejos3 papers
- The Open UniversityGB3 papers
- University of California, San FranciscoUS3 papers
- Arizona State UniversityUS2 papers
- Centre National de la Recherche ScientifiqueFR2 papers
- Fundacion Agencia Aragonesa para la Investigacion y el DesarrolloES2 papers
- Istituto Nazionale di Fisica NucleareIT2 papers
- Istituto Nazionale di Fisica Nucleare, Sezione di FerraraIT2 papers
- Istituto Nazionale di Fisica Nucleare, Sezione di Roma IIT2 papers
20 papers
Engineering diamond interfaces free of dark spins
Xiaofei Yu, Evan J. Villafranca, Stella Wang +10
Nitrogen-vacancy (NV) centers in diamond are extensively utilized as quantum sensors for imaging fields at the nanoscale. The ultra-high sensitivity of NV magnetometers has enabled…
Geometry-Driven Mechanical Memory in a Random Fibrous Matrix
Mainak Sarkar, Christina Laukaitis, Amy Wagoner Johnson
Disordered fibrous matrices, formed by the random assembly of fibers, provide the structural framework for many biological systems and biomaterials. Applied deformation modifies th…
Correlations of quantum curvature and variance of Chern numbers
Omri Gat, Michael Wilkinson
We analyse the correlation function of the quantum curvature in complex quantum systems, using a random matrix model to provide an exemplar of a universal correlation function. We…
Scaling law describes the spin-glass response in theory, experiments and simulations
Q. Zhai, I. Paga, M. Baity-Jesi +24
The correlation length , a key quantity in glassy dynamics, can now be precisely measured for spin glasses both in experiments and in simulations. However, known analysis method…
Pycro-manager: open-source software for integrated microscopy hardware control and image processing
Henry Pinkard, Nico Stuurman, Laura Waller
μManager, an open-source microscopy acquisition software, has been an essential tool for many microscopy experiments over the past 15 years, but is not easy to use for experiments…
A micromirror array with annular partitioning for high-speed random-access axial focusing
Nathan Tessema Ersumo, Cem Yalcin, Nick Antipa +4
Dynamic axial focusing functionality has recently experienced widespread incorporation in microscopy, augmented/virtual reality (AR/VR), adaptive optics, and material processing. H…
Curating a COVID-19 data repository and forecasting county-level death counts in the United States
Nick Altieri, Rebecca L. Barter, James Duncan +11
As the COVID-19 outbreak evolves, accurate forecasting continues to play an extremely important role in informing policy decisions. In this paper, we present our continuous curatio…
NCI Workshop on Artificial Intelligence in Radiation Oncology: Training the Next Generation
John Kang, Reid F. Thompson, Sanjay Aneja +5
Artificial intelligence (AI) is about to touch every aspect of radiotherapy from consultation, treatment planning, quality assurance, therapy delivery, to outcomes modeling. There…
Nests and Chains of Hofstadter Butterflies
Indubala I. Satija, Michael Wilkinson
The \lq Hofstadter butterfly', a plot of the spectrum of an electron in a two-dimensional periodic potential with a uniform magnetic field, contains subsets which resemble small, d…
SciPy 1.0--Fundamental Algorithms for Scientific Computing in Python
Pauli Virtanen, Ralf Gommers, Travis E. Oliphant +32
SciPy is an open source scientific computing library for the Python programming language. SciPy 1.0 was released in late 2017, about 16 years after the original version 0.1 release…
Folding pathways to crumpling in thermalized elastic frames
D. Yllanes, D. R. Nelson, M. J. Bowick
The mechanical properties of thermally excited two-dimensional crystalline membranes can depend dramatically on their geometry and topology. A particularly relevant example is the…
Veridical Data Science
Bin Yu, Karl Kumbier
Building and expanding on principles of statistics, machine learning, and scientific inquiry, we propose the predictability, computability, and stability (PCS) framework for veridi…
Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities
Marinka Zitnik, Francis Nguyen, Bo Wang +3
New technologies have enabled the investigation of biology and human health at an unprecedented scale and in multiple dimensions. These dimensions include a myriad of properties de…
Lacunarity Exponents
Michael Wilkinson, Marc Pradas, Greg Huber +1
Many physical processes result in very uneven, apparently random, distributions of matter, characterized by fluctuations of the local density over orders of magnitude. The density…
Network Enhancement: a general method to denoise weighted biological networks
Bo Wang, Armin Pourshafeie, Marinka Zitnik +4
Networks are ubiquitous in biology where they encode connectivity patterns at all scales of organization, from molecular to the biome. However, biological networks are noisy due to…
The Mpemba effect in spin glasses is a persistent memory effect
Janus collaboration, M. Baity-Jesi, E. Calore +21
The Mpemba effect occurs when a hot system cools faster than an initially colder one, when both are refrigerated in the same thermal reservoir. Using the custom built supercomputer…
The key parameters that govern translation efficiency
Dan D. Erdmann-Pham, Khanh Dao Duc, Yun S. Song
Translation of mRNA into protein is a fundamental yet complex biological process with multiple factors that can potentially affect its efficiency. Here, we study a stochastic model…
Modeling polypharmacy side effects with graph convolutional networks
Marinka Zitnik, Monica Agrawal, Jure Leskovec
The use of drug combinations, termed polypharmacy, is common to treat patients with complex diseases and co-existing conditions. However, a major consequence of polypharmacy is a m…
Word Embeddings Quantify 100 Years of Gender and Ethnic Stereotypes
Nikhil Garg, Londa Schiebinger, Dan Jurafsky +1
Word embeddings use vectors to represent words such that the geometry between vectors captures semantic relationship between the words. In this paper, we develop a framework to dem…
Speckle-Free Coherence Tomography of Turbid Media
Orly Liba, Matthew D. Lew, Elliott D. SoRelle +5
Optical coherence tomography (OCT) is a powerful biomedical imaging technology that relies on the coherent detection of backscattered light to image tissue morphology in vivo. As a…