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20212026
most citedLeveraging Analog Quantum Computing with Neutral Atoms for Solvent Configuration Prediction in Drug Discovery

11 citations

9 papers

hep-ph2026

Exploring Nucleon Structure and the Proton Mass Problem through Holographic QCD

Jiali Deng, Defu Hou

Understanding the internal structure of the proton-including the distributions of quarks and gluons and their contributions to proton properties such as mass-remains a central chal…

physics.chem-ph2025

Dual-LAO for calculating fast and robust relative binding free energies of simple and complex transformations

Narjes Ansari, Félix Aviat, Jérôme Hénin +2

Relative Binding Free Energy (RBFE) calculations are a cornerstone of rational hit-to-lead and lead optimization in modern drug discovery. However, the high computational cost and…

physics.chem-ph2025★ 1 cited

Accelerating Molecular Dynamics Simulations with Foundation Neural Network Models using Multiple Time-Step and Distillation

Côme Cattin, Thomas Plé, Olivier Adjoua +3

We present a distilled multi-time-step (DMTS) strategy to accelerate molecular dynamics simulations using foundation neural network models. DMTS uses a dual-level neural network wh…

nucl-th2025★ 3 cited

Quartet correlations near the surface of nuclei

Yixin Guo, Tomoya Naito, Hiroyuki Tajima +1

We theoretically investigate Cooper quartet correlations in doubly-magic nuclei (, , and ). We firs…

cs.GR2025★ 6 cited

VTX: Real-time high-performance molecular structure and dynamics visualization software

Maxime Maria, Simon Guionnière, Nicolas Dacquay +10

Summary: VTX is a molecular visualization software capable to handle most molecular structures and dynamics trajectories file formats. It features a real-time high-performance mole…

physics.comp-ph2024★ 3 cited

Velocity Jumps for Molecular Dynamics

Nicolaï Gouraud, Louis Lagardère, Olivier Adjoua +3

We introduce the Velocity Jumps approach, denoted as JUMP, a new class of Molecular dynamics integrators, replacing the Langevin dynamics by a hybrid model combining a classical La…

quant-ph2023★ 11 cited

Leveraging Analog Quantum Computing with Neutral Atoms for Solvent Configuration Prediction in Drug Discovery

Mauro D'Arcangelo, Daniele Loco, Fresnel team +8

We introduce quantum algorithms able to sample equilibrium water solvent molecules configurations within proteins thanks to analog quantum computing. To do so, we combine a quantum…

cs.LG2021

Binary Diffing as a Network Alignment Problem via Belief Propagation

Elie Mengin, Fabrice Rossi

In this paper, we address the problem of finding a correspondence, or matching, between the functions of two programs in binary form, which is one of the most common task in binary…

cs.LG2021★ 1 cited

Improved Algorithm for the Network Alignment Problem with Application to Binary Diffing

Elie Mengin, Fabrice Rossi

In this paper, we present a novel algorithm to address the Network Alignment problem. It is inspired from a previous message passing framework of Bayati et al. [2] and includes sev…