390 citations
- Harvard UniversityUS12 papers
- Johns Hopkins UniversityUS8 papers
- University of Wisconsin–MadisonUS8 papers
- Lawrence Berkeley National LaboratoryUS7 papers
- Stanford UniversityUS6 papers
- Cornell UniversityUS5 papers
- University of California, San FranciscoUS5 papers
- Baylor College of MedicineUS4 papers
- Boston Children's HospitalUS4 papers
- Icahn School of Medicine at Mount SinaiUS4 papers
- Imperial College LondonGB4 papers
- King's College LondonGB4 papers
29 papers
Evaluating Retrieval-Augmented Generation vs. Long-Context Input for Clinical Reasoning over EHRs
Skatje Myers, Dmitriy Dligach, Timothy A. Miller +6
Objective: To evaluate whether retrieval-augmented generation (RAG) can serve as an efficient alternative to long-context prompting for clinical reasoning over electronic health re…
BioNeuralNet: A Graph Neural Network based Multi-Omics Network Data Analysis Tool
Vicente Ramos, Sundous Hussein, Mohamed Abdel-Hafiz +6
Multi-omics data offer unprecedented insights into complex biological systems, yet their high dimensionality, sparsity, and intricate interactions pose significant analytical chall…
Combining multiplexed functional data to improve variant classification
Atlas of Variant Effects Alliance, :, Jeffrey D. Calhoun +10
With the surge in the number of variants of uncertain significance (VUS) reported in ClinVar in recent years, there is an imperative to resolve VUS at scale. Multiplexed assays of…
Genetic studies through the lens of gene networks
Marc Subirana-Granés, Jill Hoffman, Haoyu Zhang +4
Understanding the genetic basis of complex traits is a longstanding challenge in the field of genomics. Genome-wide association studies (GWAS) have identified thousands of variant-…
Learning and teaching biological data science in the Bioconductor community
Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva +15
Modern biological research is increasingly data-intensive, leading to a growing demand for effective training in biological data science. In this article, we provide an overview of…
Environment Scan of Generative AI Infrastructure for Clinical and Translational Science
Betina Idnay, Zihan Xu, William G. Adams +54
This study reports a comprehensive environmental scan of the generative AI (GenAI) infrastructure in the national network for clinical and translational science across 36 instituti…