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27 papers · 1 filter
Auto-validating von Neumann Rejection Sampling from Small Phylogenetic Tree Spaces
Raazesh Sainudiin, Thomas York
In phylogenetic inference one is interested in obtaining samples from the posterior distribution over the tree space on the basis of some observed DNA sequence data. The challenge…
Ill-Behaved Convergence of a Model of the Gd3Ga5O12 Garnet Antiferromagnet with Truncated Magnetic Dipole-Dipole Interactions
Taras Yavors'kii, Michel J. P. Gingras, Matthew Enjalran
Previous studies have found that calculations which consider long-range magnetic dipolar interactions truncated at a finite cut-off distance Rc predict spurious (unphysical) long-r…
The Bayesian `star paradox' persists for long finite sequences
Mike Steel, Frederick A. Matsen
The `star paradox' in phylogenetics is the tendency for a particular resolved tree to be sometimes strongly supported even when the data is generated by an unresolved (`star') tree…
The Stabilized Poincare-Heisenberg algebra: a Clifford algebra viewpoint
N. G. Gresnigt, P. F. Renaud, P. H. Butler
The stabilized Poincare-Heisenberg algebra (SPHA) is the Lie algebra of quantum relativistic kinematics generated by fifteen generators. It is obtained from imposing stability cond…
Five years of searches for point sources of astrophysical neutrinos with the AMANDA-II neutrino telescope
A. Achterberg
We report the results of a five-year survey of the northern sky to search for point sources of high energy neutrinos. The search was performed on the data collected with the AMANDA…
On the variational distance of two trees
M. A. Steel, L. A. Székely
A widely studied model for generating sequences is to ``evolve'' them on a tree according to a symmetric Markov process. We prove that model trees tend to be maximally ``far apart'…