output
20102026
most citedDevelopment and Validation of a Deep Learning Algorithm for Improving Gleason Scoring of Prostate Cancer

509 citations

49 papers

cs.HC2026

User-Centered Design for Digital Patient-Navigation Tools in Oncology: Scoping Review

Saba Kheirinejad, Brianna M White, Parnian Kheirkhah Rahimabad +9

Navigation programs for patients with cancer improve access and continuity of care, yet their digital transformation is often limited by poor usability and inadequate uptake. Apply…

cs.LG2025★ 1 cited

Comparative Evaluation of Explainable Machine Learning Versus Linear Regression for Predicting County-Level Lung Cancer Mortality Rate in the United States

Soheil Hashtarkhani, Brianna M. White, Benyamin Hoseini +2

Lung cancer (LC) is a leading cause of cancer-related mortality in the United States. Accurate prediction of LC mortality rates is crucial for guiding targeted interventions and ad…

cs.CL2025★ 3 cited

Cancer Diagnosis Categorization in Electronic Health Records Using Large Language Models and BioBERT: Model Performance Evaluation Study

Soheil Hashtarkhani, Rezaur Rashid, Christopher L Brett +6

Electronic health records contain inconsistently structured or free-text data, requiring efficient preprocessing to enable predictive health care models. Although artificial intell…

cs.LG2025★ 8 cited

Analyzing Geospatial and Socioeconomic Disparities in Breast Cancer Screening Among Populations in the United States: Machine Learning Approach

Soheil Hashtarkhani, Yiwang Zhou, Fekede Asefa Kumsa +3

Breast cancer screening plays a pivotal role in early detection and subsequent effective management of the disease, impacting patient outcomes and survival rates. This study aims t…

cs.CY2025★ 11 cited

Digital Health Innovations for Screening and Mitigating Mental Health Impacts of Adverse Childhood Experiences: Narrative Review

Brianna M White, Rameshwari Prasad, Nariman Ammar +2

This study presents a narrative review of the use of digital health technologies (DHTs) and artificial intelligence to screen and mitigate risks and mental health consequences asso…

physics.med-ph2024★ 2 cited

Dual Photonics Probing of Nano- to Submicron-Scale Structural Alterations in Human Brain Tissues or Cells and Chromatin or DNA with the Progression of Alzheimers Disease

Fatemah Alharthi, Ishmael Apachigawo, Dhruvil Solanki +4

Understanding alterations in structural disorders in tissue or cells or building blocks, such as DNA or chromatin in the human brain, at the nano to submicron level provides us wit…

q-bio.GN2024★ 10 cited

wgatools: an ultrafast toolkit for manipulating whole genome alignments

Wenjie Wei, Songtao Gui, Jian Yang +3

Summary: With the rapid development of long-read sequencing technologies, the era of individual complete genomes is approaching. We have developed wgatools, a cross-platform, ultra…

cs.DC2024★ 4 cited

Rapid GPU-Based Pangenome Graph Layout

Jiajie Li, Jan-Niklas Schmelzle, Yixiao Du +6

Computational Pangenomics is an emerging field that studies genetic variation using a graph structure encompassing multiple genomes. Visualizing pangenome graphs is vital for under…

q-bio.QM2024★ 117 cited

Explainable artificial intelligence in breast cancer detection and risk prediction: A systematic scoping review

Amirehsan Ghasemi, Soheil Hashtarkhani, David L Schwartz +1

With the advances in artificial intelligence (AI), data-driven algorithms are becoming increasingly popular in the medical domain. However, due to the nonlinear and complex behavio…

q-bio.QM2024★ 8 cited

The association between neighborhood obesogenic factors and prostate cancer risk and mortality: the Southern Community Cohort Study

Fekede Asefa Kumsa, Jay H. Fowke, Soheil Hashtarkhani +3

Prostate cancer is one of the leading causes of cancer-related mortality among men in the U.S. We examined the role of neighborhood obesogenic attributes on prostate cancer risk an…

cs.CY2024★ 20 cited

Enhancing Health Care Accessibility and Equity Through a Geoprocessing Toolbox for Spatial Accessibility Analysis: Development and Case Study

Soheil Hashtarkhani, David L Schwartz, Arash Shaban-Nejad

Access to health care services is a critical determinant of population health and well-being. Measuring spatial accessibility to health services is essential for understanding heal…

cs.CY2023★ 24 cited

Medication abortion via digital health in the United States: a systematic scoping review

Fekede Asefa Kumsa, Rameshwari Prasad, Arash Shaban-Nejad

Digital health, including telemedicine, has increased access to abortion care. The convenience, flexibility of appointment times, and ensured privacy to abortion users may make abo…

q-bio.OT2023★ 24 cited

Forum on immune digital twins: a meeting report

Reinhard Laubenbacher, Fred Adler, Gary An +16

Medical digital twins are computational models of human biology relevant to a given medical condition, which can be tailored to an individual patient, thereby predicting the course…

cs.LG2023

Identifying factors associated with fast visual field progression in patients with ocular hypertension based on unsupervised machine learning

Xiaoqin Huang, Asma Poursoroush, Jian Sun +3

Purpose: To identify ocular hypertension (OHT) subtypes with different trends of visual field (VF) progression based on unsupervised machine learning and to discover factors associ…

cond-mat.mtrl-sci2023★ 36 cited

Doping of Cr in Graphene Using Electron Beam Manipulation for Functional Defect Engineering

Ondrej Dyck, Mina Yoon, Lizhi Zhang +3

Chromium atoms in graphene have been proposed to exhibit magnetic moments and spin-selective conducting states depending on the local bonding geometry within the graphene structure…

cs.CL2023★ 24 cited

Exploring celebrity influence on public attitude towards the COVID-19 pandemic: social media shared sentiment analysis

Brianna M White, Chad A Melton, Parya Zareie +3

The COVID-19 pandemic has introduced new opportunities for health communication, including an increase in the public use of online outlets for health-related emotions. People have…

cs.CL2022★ 52 cited

Fine-tuned Sentiment Analysis of COVID-19 Vaccine-Related Social Media Data: Comparative Study

Chad A Melton, Brianna M White, Robert L Davis +2

This study investigated and compared public sentiment related to COVID-19 vaccines expressed on two popular social media platforms, Reddit and Twitter, harvested from January 1, 20…

cs.CV2022★ 5 cited

Stacking Ensemble Learning in Deep Domain Adaptation for Ophthalmic Image Classification

Yeganeh Madadi, Vahid Seydi, Jian Sun +2

Domain adaptation is an attractive approach given the availability of a large amount of labeled data with similar properties but different domains. It is effective in image classif…

cs.LG2022★ 23 cited

Association Between Neighborhood Factors and Adult Obesity in Shelby County, Tennessee: Geospatial Machine Learning Approach

Whitney S Brakefield, Olufunto A Olusanya, Arash Shaban-Nejad

Obesity is a global epidemic causing at least 2.8 million deaths per year. This complex disease is associated with significant socioeconomic burden, reduced work productivity, unem…

cs.AI2022★ 14 cited

An Urban Population Health Observatory for Disease Causal Pathway Analysis and Decision Support: Underlying Explainable Artificial Intelligence Model

Whitney S Brakefield, Nariman Ammar, Arash Shaban-Nejad

This study sought to (1) expand our existing Urban Population Health Observatory (UPHO) system by incorporating a semantics layer; (2) cohesively employ machine learning and semant…

cs.CY2022★ 20 cited

Examining the Implementation of Digital Health to Strengthen the COVID-19 Pandemic Response and Recovery and Scale up Equitable Vaccine Access in African Countries

Olufunto A Olusanya, Brianna White, Chad A Melton +1

The COVID-19 pandemic has profoundly impacted the world, having taken the lives of over 6 million individuals. Accordingly, this pandemic has caused a shift in conversations surrou…

cs.LG2022★ 2 cited

AutoCl : A Visual Interactive System for Automatic Deep Learning Classifier Recommendation Based on Models Performance

Fuad Ahmed, Rubayea Ferdows, Md Rafiqul Islam +1

Nowadays, deep learning (DL) models being increasingly applied to various fields, people without technical expertise and domain knowledge struggle to find an appropriate model for…

cs.IR2021★ 220 cited

Public sentiment analysis and topic modeling regarding COVID-19 vaccines on the Reddit social media platform: A call to action for strengthening vaccine confidence

Chad A Melton, Olufunto A Olusanya, Nariman Ammar +1

The COVID-19 pandemic fueled one of the most rapid vaccine developments in history. However, misinformation spread through online social media often leads to negative vaccine senti…

cs.CY2021★ 34 cited

An Urban Population Health Observatory System to Support COVID-19 Pandemic Preparedness, Response, and Management: Design and Development Study

Whitney S. Brakefield, Nariman Ammar, Olufunto A. Olusanya +1

Background: COVID-19 is impacting people worldwide and is currently a leading cause of death in many countries. This study sought to redefine the Healthy People 2030 SDoH taxonomy…