papers

Publications (8)

q-bio.QM2024

MMIL: A novel algorithm for disease associated cell type discovery

Erin Craig, Timothy Keyes, Jolanda Sarno +5

Single-cell datasets often lack individual cell labels, making it challenging to identify cells associated with disease. To address this, we introduce Mixture Modeling for Multiple…

cs.CY2026

Adoption and Use of LLMs at an Academic Medical Center

Nigam H. Shah, Nerissa Ambers, Abby Pandya +55

While large language models (LLMs) can support clinical documentation needs, standalone tools struggle with "workflow friction" from manual data entry. We developed ChatEHR, a syst…

cs.CL2025

MedFactEval and MedAgentBrief: A Framework and Workflow for Generating and Evaluating Factual Clinical Summaries

François Grolleau, Emily Alsentzer, Timothy Keyes +17

Evaluating factual accuracy in Large Language Model (LLM)-generated clinical text is a critical barrier to adoption, as expert review is unscalable for the continuous quality assur…

cs.CL2025

MedHELM: Holistic Evaluation of Large Language Models for Medical Tasks

Suhana Bedi, Hejie Cui, Miguel Fuentes +78

While large language models (LLMs) achieve near-perfect scores on medical licensing exams, these evaluations inadequately reflect the complexity and diversity of real-world clinica…

cs.CY2026

Deployment and Evaluation of an EHR-integrated, Large Language Model-Powered Tool to Triage Surgical Patients

Jane Wang, Timothy Keyes, April S Liang +10

Surgical co-management (SCM) is an evidence-based model in which hospitalists jointly manage medically complex perioperative patients alongside surgical teams. Despite its clinical…

cs.CL2026

Multi-Method Validation of Large Language Model Medical Translation Across High- and Low-Resource Languages

Chukwuebuka Anyaegbuna, Eduardo Juan Perez Guerrero, Jerry Liu +6

Language barriers affect 27.3 million U.S. residents with non-English language preference, yet professional medical translation remains costly and often unavailable. We evaluated f…

q-bio.OT2026

Monitoring Deployed AI Systems in Health Care

Timothy Keyes, Alison Callahan, Abby S. Pandya +18

Post-deployment monitoring of artificial intelligence (AI) systems in health care is essential to ensure their safety, quality, and sustained benefit-and to support governance deci…

cs.AI2026

Development, Evaluation, and Deployment of a Multi-Agent System for Thoracic Tumor Board

Tim Ellis-Caleo, Timothy Keyes, Nerissa Ambers +5

Tumor boards are multidisciplinary conferences dedicated to producing actionable patient care recommendations with live review of primary radiology and pathology data. Succinct pat…