Publications (4)
Design Strategies and Approximation Methods for High-Performance Computing Variability Management
Yueyao Wang, Li Xu, Yili Hong +6
Performance variability management is an active research area in high-performance computing (HPC). We focus on input/output (I/O) variability. To study the performance variability,…
Efficient implementation of the hybrid method for stochastic simulation of biochemical systems
Shuo Wang, Yang Pu, Layne Watson +1
Stochastic effect in cellular systems has been an important topic in systems biology. Stochastic modeling and simulation methods are important tools to study stochastic effect. Giv…
Prediction of High-Performance Computing Input/Output Variability and Its Application to Optimization for System Configurations
Li Xu, Thomas Lux, Tyler Chang +6
Performance variability is an important measure for a reliable high performance computing (HPC) system. Performance variability is affected by complicated interactions between nume…
Finding Acceptable Parameter Regions of Stochastic Hill functions for Multisite Phosphorylation Mechanism
Minghan Chen, Mansooreh Ahmadian, Layne Watson +1
Multisite phosphorylation plays an important role in regulating switchlike protein activity and has been used widely in mathematical models. With the development of new experimenta…