papers

Publications (12)

cs.LO2023

Meta-MeTTa: an operational semantics for MeTTa

Lucius Gregory Meredith, Ben Goertzel, Jonathan Warrell +1

We present an operational semantics for the language MeTTa.

quant-ph2019

Quantum Computing at the Frontiers of Biological Sciences

Prashant S. Emani, Jonathan Warrell, Alan Anticevic +15

The search for meaningful structure in biological data has relied on cutting-edge advances in computational technology and data science methods. However, challenges arise as we pus…

quant-ph2025

-QVAE: A Quantum Variational Autoencoder utilizing Regularized Mixed-state Latent Representations

Gaoyuan Wang, Jonathan Warrell, Prashant S. Emani +1

A major challenge in quantum computing is its application to large real-world datasets due to scarce quantum hardware resources. One approach to enabling tractable quantum models f…

cs.LG2026

Logical Guidance for the Exact Composition of Diffusion Models

Francesco Alesiani, Jonathan Warrell, Tanja Bien +3

We propose LOGDIFF (Logical Guidance for the Exact Composition of Diffusion Models), a guidance framework for diffusion models that enables principled constrained generation with c…

cs.LG2026

MPP-GNN: Subject-Adaptive Community Detection for fMRI-Based Alzheimer's Disease Classification

Yang Zhang, Xiao Zhou, Jonathan Warrell +3

Functional magnetic resonance imaging (fMRI) is a widely used technique for studying the brain. Recent methods that utilize graph neural networks (GNNs) for analysis of brain funct…

cs.GR2014

ImageSpirit: Verbal Guided Image Parsing

Ming-Ming Cheng, Shuai Zheng, Wen-Yan Lin +6

Humans describe images in terms of nouns and adjectives while algorithms operate on images represented as sets of pixels. Bridging this gap between how humans would like to access…

cs.LG2018

Rank Projection Trees for Multilevel Neural Network Interpretation

Jonathan Warrell, Hussein Mohsen, Mark Gerstein

A variety of methods have been proposed for interpreting nodes in deep neural networks, which typically involve scoring nodes at lower layers with respect to their effects on the o…

q-bio.PE2024

Variational methods for Learning Multilevel Genetic Algorithms using the Kantorovich Monad

Jonathan Warrell, Francesco Alesiani, Cameron Smith +2

Levels of selection and multilevel evolutionary processes are essential concepts in evolutionary theory, and yet there is a lack of common mathematical models for these core ideas.…

cs.CV2014

A Tiered Move-making Algorithm for General Non-submodular Pairwise Energies

Vibhav Vineet, Jonathan Warrell, Philip H. S. Torr

A large number of problems in computer vision can be modelled as energy minimization problems in a Markov Random Field (MRF) or Conditional Random Field (CRF) framework. Graph-cuts…

quant-ph2025

Efficient Privacy-Preserving Training of Quantum Neural Networks by Using Mixed States to Represent Input Data Ensembles

Gaoyuan Wang, Jonathan Warrell, Mark Gerstein

Quantum neural networks (QNNs) are gaining increasing interest due to their potential to detect complex patterns in data by leveraging uniquely quantum phenomena. This makes them p…

cs.AI2022

A meta-probabilistic-programming language for bisimulation of probabilistic and non-well-founded type systems

Jonathan Warrell, Alexey Potapov, Adam Vandervorst +1

We introduce a formal meta-language for probabilistic programming, capable of expressing both programs and the type systems in which they are embedded. We are motivated here by the…

cs.LG2022

Higher-Order Generalization Bounds: Learning Deep Probabilistic Programs via PAC-Bayes Objectives

Jonathan Warrell, Mark Gerstein

Deep Probabilistic Programming (DPP) allows powerful models based on recursive computation to be learned using efficient deep-learning optimization techniques. Additionally, DPP of…