Publications (4)
HuBMAP Data Portal: A Resource for Multimodal Spatial and Single-Cell Data of Healthy Human Tissues
Morgan L. Turner, Thomas C. Smits, Tiffany S. Liaw +46
The NIH Human BioMolecular Atlas Program (HuBMAP) Data Portal (https://portal.hubmapconsortium.org/) serves as a comprehensive repository for multimodal, multi-scale spatial and si…
Gosling Designer: a Platform to Democratize Construction and Sharing of Genomics Data Visualization Tools
Sehi L'Yi, John Conroy, Priya Misner +5
Analysis of genomics data is central to nearly all areas of modern biology. Despite significant progress in artificial intelligence (AI) and computational methods, these technologi…
Auto-ARGUE: LLM-Based Report Generation Evaluation
William Walden, Marc Mason, Orion Weller +10
Generation of citation-backed reports is a primary use case for retrieval-augmented generation (RAG) systems. While open-source evaluation tools exist for various RAG tasks, tools…
Vitessce Link: A Mixed Reality and 2D Display Hybrid Approach for Visual Analysis of 3D Tissue Maps
Eric Mörth, Morgan L. Turner, Cydney Nielsen +14
Advances in spatial omics and high-resolution imaging enable the creation of three-dimensional (3D) tissue maps that capture cellular organization and interactions in situ. While t…