Publications (5)
Probabilistic Fluorescence-Based Synapse Detection
Anish K. Simhal, Cecilia Aguerrebere, Forrest Collman +5
Brain function results from communication between neurons connected by complex synaptic networks. Synapses are themselves highly complex and diverse signaling machines, containing…
Common Cell type Nomenclature for the mammalian brain: A systematic, extensible convention
Jeremy A. Miller, Nathan W. Gouwens, Bosiljka Tasic +7
The advancement of single cell RNA-sequencing technologies has led to an explosion of cell type definitions across multiple organs and organisms. While standards for data and metad…
Automated Neuron Shape Analysis from Electron Microscopy
Sharmishtaa Seshamani, Leila Elabbady, Casey Schneider-Mizell +17
Morphology based analysis of cell types has been an area of great interest to the neuroscience community for several decades. Recently, high resolution electron microscopy (EM) dat…
NeuroStorm: Accelerating Brain Science Discovery in the Cloud
Gregory Kiar, Robert J. Anderson, Alex Baden +24
Neuroscientists are now able to acquire data at staggering rates across spatiotemporal scales. However, our ability to capitalize on existing datasets, tools, and intellectual capa…
A Community-Developed Open-Source Computational Ecosystem for Big Neuro Data
Randal Burns, Eric Perlman, Alex Baden +27
Big imaging data is becoming more prominent in brain sciences across spatiotemporal scales and phylogenies. We have developed a computational ecosystem that enables storage, visual…