Publications (5)
The IBEX Imaging Knowledge-Base: A Community Resource Enabling Adoption and Development of Immunofluoresence Imaging Methods
Ziv Yaniv, Ifeanyichukwu U. Anidi, Leanne Arakkal +59
The iterative bleaching extends multiplexity (IBEX) Knowledge-Base is a central portal for researchers adopting IBEX and related 2D and 3D immunofluorescence imaging methods. The d…
IBEX: An open and extensible method for high content multiplex imaging of diverse tissues
Andrea J. Radtke, Colin J. Chu, Ziv Yaniv +14
High content imaging is needed to catalogue the variety of cellular phenotypes and multi-cellular ecosystems present in metazoan tissues. We recently developed Iterative Bleaching…
Deep Learning for Vascular Segmentation and Applications in Phase Contrast Tomography Imaging
Ekin Yagis, Shahab Aslani, Yashvardhan Jain +10
Automated blood vessel segmentation is vital for biomedical imaging, as vessel changes indicate many pathologies. Still, precise segmentation is difficult due to the complexity of…
MesoGraph: Automatic Profiling of Malignant Mesothelioma Subtypes from Histological Images
Mark Eastwood, Heba Sailem, Silviu Tudor +10
Malignant mesothelioma is classified into three histological subtypes, Epithelioid, Sarcomatoid, and Biphasic according to the relative proportions of epithelioid and sarcomatoid t…
The IBEX Knowledge-Base: Achieving more together with open science
Andrea J. Radtke, Ifeanyichukwu Anidi, Leanne Arakkal +55
Iterative Bleaching Extends multipleXity (IBEX) is a versatile method for highly multiplexed imaging of diverse tissues. Based on open science principles, we created the IBEX Knowl…