Publications (26)
PUFFIN: Protein Unit Discovery with Functional Supervision
Gökçe UludoÄan, Buse Giledereli, Elif Ozkirimli +1
PUMA: Discovery of Protein Units via Mutation-Aware Merging
Burak Suyunu, Ãzdeniz Dolu, Ibukunoluwa Abigail Olaosebikan +2
STAR-GO: Improving Protein Function Prediction by Learning to Hierarchically Integrate Ontology-Informed Semantic Embeddings
Mehmet Efe Akça, Gökçe UludoÄan, Arzucan Ãzgür +1
DebiasedDTA: A Framework for Improving the Generalizability of Drug-Target Affinity Prediction Models
Rıza Ãzçelik, Alperen BaÄ, Berk Atıl +3
WideDTA: prediction of drug-target binding affinity
Hakime Ãztürk, Elif Ozkirimli, Arzucan Ãzgür
Named Entity Recognition on Twitter for Turkish using Semi-supervised Learning with Word Embeddings
Eda Okur, Hakan Demir, Arzucan Ãzgür
Cluster-based Mention Typing for Named Entity Disambiguation
Arda Ãelebi, Arzucan Ãzgür
Resources for Turkish Dependency Parsing: Introducing the BOUN Treebank and the BoAT Annotation Tool
Utku Türk, Furkan Atmaca, Åaziye Betül ÃzateÅ +6
DeepDTA: Deep Drug-Target Binding Affinity Prediction
Hakime Ãztürk, Elif Ozkirimli, Arzucan Ãzgür
Cancer Vaccine Adjuvant Name Recognition from Biomedical Literature using Large Language Models
Hasin Rehana, Jie Zheng, Leo Yeh +7
Linguistic Laws Meet Protein Sequences: A Comparative Analysis of Subword Tokenization Methods
Burak Suyunu, Enes Taylan, Arzucan Ãzgür
A novel methodology on distributed representations of proteins using their interacting ligands
Hakime Ãztürk, Elif Ozkirimli, Arzucan Ãzgür
Evaluation of GPT and BERT-based models on identifying protein-protein interactions in biomedical text
Hasin Rehana, Nur Bengisu Ãam, Mert Basmaci +5
Enhancements to the BOUN Treebank Reflecting the Agglutinative Nature of Turkish
BüÅra MarÅan, Salih Furkan Akkurt, Muhammet Åen +7
A Dataset and BERT-based Models for Targeted Sentiment Analysis on Turkish Texts
M. Melih Mutlu, Arzucan Ãzgür
Exploiting Pretrained Biochemical Language Models for Targeted Drug Design
Gökçe UludoÄan, Elif Ozkirimli, Kutlu O. Ulgen +2
Balancing Methods for Multi-label Text Classification with Long-Tailed Class Distribution
Yi Huang, Buse Giledereli, Abdullatif Köksal +2
The RELX Dataset and Matching the Multilingual Blanks for Cross-Lingual Relation Classification
Abdullatif Köksal, Arzucan Ãzgür
Vapur: A Search Engine to Find Related Protein-Compound Pairs in COVID-19 Literature
Abdullatif Köksal, Hilal Dönmez, Rıza Ãzçelik +2
Hate Speech Detection in Turkish and Arabic: A Comprehensive Study
Somaiyeh Dehghan, Gökçe UludoÄan, Mehmet Umut Åen +3
PEAK: Explainable Privacy Assistant through Automated Knowledge Extraction
Gonul Ayci, Arzucan Ãzgür, Murat Åensoy +1
Uncertainty-aware Personal Assistant for Making Personalized Privacy Decisions
Gonul Ayci, Murat Sensoy, Arzucan Ãzgür +1
ChemBoost: A chemical language based approach for protein-ligand binding affinity prediction
Rıza Ãzçelik, Hakime Ãztürk, Arzucan Ãzgür +1
Exploring Data-Driven Chemical SMILES Tokenization Approaches to Identify Key Protein-Ligand Binding Moieties
Asu BüÅra Temizer, Gökçe UludoÄan, Rıza Ãzçelik +5
A Hybrid Approach to Dependency Parsing: Combining Rules and Morphology with Deep Learning
Åaziye Betül ÃzateÅ, Arzucan Ãzgür, Tunga Güngör +1
Exploring Chemical Space using Natural Language Processing Methodologies for Drug Discovery
Hakime Ãztürk, Arzucan Ãzgür, Philippe Schwaller +2