Publications (25)
Safire: Similarity Framework for Visualization Retrieval
Huyen N. Nguyen, Nils Gehlenborg
Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks
David KouÅil, Trevor Manz, Tereza Clarence +1
EasyVitessce: auto-magically adding interactivity to Scverse single-cell and spatial biology plots
Selena Luo, Mark S. Keller, Tabassum Kakar +2
Interactive visualization of kidney micro-compartmental segmentations and associated pathomics on whole slide images
Mark S. Keller, Nicholas Lucarelli, Yijiang Chen +13
A Generic Framework and Library for Exploration of Small Multiples through Interactive Piling
Fritz Lekschas, Xinyi Zhou, Wei Chen +3
Agentic Authoring of Interactive Multiview Visualizations in Genomics
Astrid van den Brandt, Kiroong Choe, Sehi L'Yi +2
Sycamore: Characterizing Synthetic Personas for Evaluating Genomics Visualization Retrieval
Huyen N. Nguyen, Astrid van den Brandt, Nils Gehlenborg
Visual Pattern-Driven Exploration of Big Data
Michael Behrisch, Robert Krueger, Fritz Lekschas +3
Guidelines for reporting single-cell RNA-Seq experiments
Anja Füllgrabe, Nancy George, Matthew Green +16
Tasks, Techniques, and Tools for Genomic Data Visualization
Sabrina Nusrat, Theresa Harbig, Nils Gehlenborg
Gosling Designer: a Platform to Democratize Construction and Sharing of Genomics Data Visualization Tools
Sehi L'Yi, John Conroy, Priya Misner +5
scellop: A Scalable Redesign of Cell Population Plots for Single-Cell Data
Thomas C. Smits, Nikolay Akhmetov, Tiffany S. Liaw +3
MITI Minimum Information guidelines for highly multiplexed tissue images
Denis Schapiro, Clarence Yapp, Artem Sokolov +36
HuBMAP Data Portal: A Resource for Multimodal Spatial and Single-Cell Data of Healthy Human Tissues
Morgan L. Turner, Thomas C. Smits, Tiffany S. Liaw +46
A Generative AI System for Biomedical Data Discovery with Grammar-Based Visualizations
Devin Lange, Shanghua Gao, Pengwei Sui +4
Mapping the Human Body at Cellular Resolution -- The NIH Common Fund Human BioMolecular Atlas Program
Michael P Snyder, Shin Lin, Amanda Posgai +22
YAC: Bridging Natural Language and Interactive Visual Exploration with Generative AI for Biomedical Data Discovery
Devin Lange, Shanghua Gao, Pengwei Sui +7
Automatic Synthesis of Visualization Design Knowledge Bases
Hyeok Kim, Sehi L'Yi, Nils Gehlenborg +1
Periphery Plots for Contextualizing Heterogeneous Time-Based Charts
Bryce Morrow, Trevor Manz, Arlene E. Chung +2
Characterizing Multimodal Interaction in Visualization Authoring Tools
Astrid van den Brandt, Sehi L'Yi, Huyen N. Nguyen +2
Pluot: Towards 'write once, run everywhere' visualization software
Mark S. Keller, Nils Gehlenborg
Visualization Retrieval for Data Literacy: Position Paper
Huyen N. Nguyen, Nils Gehlenborg
GQVis: A Dataset of Genomics Data Questions and Visualizations for Generative AI
Skylar Sargent Walters, Arthea Valderrama, Thomas C. Smits +5
Vitessce Link: A Mixed Reality and 2D Display Hybrid Approach for Visual Analysis of 3D Tissue Maps
Eric Mörth, Morgan L. Turner, Cydney Nielsen +14
Beyond Generating Code: Evaluating GPT on a Data Visualization Course
Chen Zhu-Tian, Chenyang Zhang, Qianwen Wang +5