SESNet: sequence-structure feature-integrated deep learning method for data-efficient protein engineering

Mingchen Li, Liqi Kang, Yi Xiong +4

Gradient Descent with Early Stopping is Provably Robust to Label Noise for Overparameterized Neural Networks

Mingchen Li, Mahdi Soltanolkotabi, Samet Oymak

VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning

Yang Tan, Chen Liu, Jingyuan Gao +8

Exploring Weight Importance and Hessian Bias in Model Pruning

Mingchen Li, Yahya Sattar, Christos Thrampoulidis +1

Exploiting Meta-Learning-based Poisoning Attacks for Graph Link Prediction

Mingchen Li, Di Zhuang, Keyu Chen +2

TemPL: A Novel Deep Learning Model for Zero-Shot Prediction of Protein Stability and Activity Based on Temperature-Guided Language Modeling

Pan Tan, Mingchen Li, Liang Zhang +2

Counterfactual Graph for Multi-Agent LLM Calibration

Jiatan Huang, Mingchen Li, Ziming Li +3

Benchingmaking Large Langage Models in Biomedical Triple Extraction

Mingchen Li, Huixue Zhou, Rui Zhang

NL2Repo-Bench: Towards Long-Horizon Repository Generation Evaluation of Coding Agents

Jingzhe Ding, Shengda Long, Changxin Pu +46

RICE-PO: Turning Retrieval Interactions into Credit Signals for Reasoning Agents

Mingchen Li, Hansi Zeng, Zhuo Qian +3

Federated Multi-Sequence Stochastic Approximation with Local Hypergradient Estimation

Davoud Ataee Tarzanagh, Mingchen Li, Pranay Sharma +1

Digital Skin, Digital Bias: Uncovering Tone-Based Biases in LLMs and Emoji Embeddings

Mingchen Li, Wajdi Aljedaani, Yingjie Liu +5

Multi-Fusion Chinese WordNet (MCW) : Compound of Machine Learning and Manual Correction

Mingchen Li, Zili Zhou, Yanna Wang

RiTeK: A Dataset for Large Language Models Complex Reasoning over Textual Knowledge Graphs in Medicine

Jiatan Huang, Mingchen Li, Zonghai Yao +8

VenusMutHub: A systematic evaluation of protein mutation effect predictors on small-scale experimental data

Liang Zhang, Hua Pang, Chenghao Zhang +11

W-procer: Weighted Prototypical Contrastive Learning for Medical Few-Shot Named Entity Recognition

Mingchen Li, Yang Ye, Jeremy Yeung +3

Generalization Guarantees for Neural Architecture Search with Train-Validation Split

Samet Oymak, Mingchen Li, Mahdi Soltanolkotabi

Securing LLMs in the Wild: Privacy and Security Challenges at the Edge

Ren-Yi Huang, Mingchen Li, Dumindu Samaraweera +1

The paper examines how efficiency‑focused optimizations for deploying large language models on edge devices create new security and privacy vulnerabilities, and it introduces a tax…

Rank-and-Reason: Multi-Agent Collaboration Accelerates Zero-Shot Protein Mutation Prediction

Yang Tan, Yuanxi Yu, Can Wu +7

Locally Differentially Private Distributed Deep Learning via Knowledge Distillation

Di Zhuang, Mingchen Li, J. Morris Chang

PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications

Yang Tan, Mingchen Li, Pan Tan +4

Semantic Structure based Query Graph Prediction for Question Answering over Knowledge Graph

Mingchen Li, Shihao Ji

Enhanced Structured Lasso Pruning with Class-wise Information

Xiang Liu, Mingchen Li, Xia Li +7

CPE-Pro: A Structure-Sensitive Deep Learning Method for Protein Representation and Origin Evaluation

Wenrui Gou, Wenhui Ge, Yang Tan +3

AutoBalance: Optimized Loss Functions for Imbalanced Data

Mingchen Li, Xuechen Zhang, Christos Thrampoulidis +2

TVNet: A Novel Time Series Analysis Method Based on Dynamic Convolution and 3D-Variation

Chenghan Li, Mingchen Li, Ruisheng Diao

Understand the Dynamic World: An End-to-End Knowledge Informed Framework for Open Domain Entity State Tracking

Mingchen Li, Lifu Huang

MedChatZH: a Better Medical Adviser Learns from Better Instructions

Yang Tan, Mingchen Li, Zijie Huang +2

Short Text Classification via Knowledge powered Attention with Similarity Matrix based CNN

Mingchen Li, Gabtone. Clinton, Yijia Miao +1

DP-GTR: Differentially Private Prompt Protection via Group Text Rewriting

Mingchen Li, Heng Fan, Song Fu +2

JALMBench: Benchmarking Jailbreak Vulnerabilities in Audio Language Models

Zifan Peng, Yule Liu, Zhen Sun +9

RAMIE: Retrieval-Augmented Multi-task Information Extraction with Large Language Models on Dietary Supplements

Zaifu Zhan, Shuang Zhou, Mingchen Li +1

DynaMo: Dynamic Community Detection by Incrementally Maximizing Modularity

Di Zhuang, J. Morris Chang, Mingchen Li

A Review of Reinforcement Learning for Natural Language Processing, and Applications in Healthcare

Ying Liu, Haozhu Wang, Huixue Zhou +6

Beyond Refusal: A Same-Lineage Study of Aligned and Abliterated LLMs for Vulnerability Analysis

Mingchen Li, Meikang Qiu, Zifan Peng +4

Sequence-Only Prediction of Binding Affinity Changes: A Robust and Interpretable Model for Antibody Engineering

Chen Liu, Mingchen Li, Yang Tan +3

FedYolo: Augmenting Federated Learning with Pretrained Transformers

Xuechen Zhang, Mingchen Li, Xiangyu Chang +4

Class-attribute Priors: Adapting Optimization to Heterogeneity and Fairness Objective

Xuechen Zhang, Mingchen Li, Jiasi Chen +2

GLEN-Bench: A Graph-Language based Benchmark for Nutritional Health

Jiatan Huang, Zheyuan Zhang, Tianyi Ma +4

Provable and Efficient Continual Representation Learning

Yingcong Li, Mingchen Li, M. Salman Asif +1

In-Context Optimization for Retrieval-Augmented Generation: A Gradient-Descent Perspective

Mingchen Li, Jiatan Huang, Chuxu Zhang +2

CancerLLM: A Large Language Model in Cancer Domain

Mingchen Li, Jiatan Huang, Jeremy Yeung +5

Epi-Curriculum: Episodic Curriculum Learning for Low-Resource Domain Adaptation in Neural Machine Translation

Keyu Chen, Di Zhuang, Mingchen Li +1

Efficient and Effective Internal Memory Retrieval for LLM-Based Healthcare Prediction

Mingchen Li, Jiatan Huang, Zonghai Yao +1

Pro-PRIME: A general Temperature-Guided Language model to engineer enhanced Stability and Activity in Proteins

Fan Jiang, Mingchen Li, Jiajun Dong +23

A Hierarchical N-Gram Framework for Zero-Shot Link Prediction

Mingchen Li, Junfan Chen, Samuel Mensah +3

Rejection or Inclusion in the Emotion-Identity Dynamics of TikTok Refugees on RedNote

Mingchen Li, Wenbo Xu, Wenqing Gu +5

Benchmarking Retrieval-Augmented Large Language Models in Biomedical NLP: Application, Robustness, and Self-Awareness

Mingchen Li, Zaifu Zhan, Han Yang +3

"What Did It Actually Do?": Understanding Risk Awareness and Traceability for Computer-Use Agents

Zifan Peng, Mingchen Li

Enhancing the efficiency of protein language models with minimal wet-lab data through few-shot learning

Ziyi Zhou, Liang Zhang, Yuanxi Yu +3

BiomedRAG: A Retrieval Augmented Large Language Model for Biomedicine

Mingchen Li, Halil Kilicoglu, Hua Xu +1

MC-GEN:Multi-level Clustering for Private Synthetic Data Generation

Mingchen Li, Di Zhuang, J. Morris Chang

Self-evolving AI agents for protein discovery and directed evolution

Yang Tan, Lingrong Zhang, Mingchen Li +5

On the Marginal Benefit of Active Learning: Does Self-Supervision Eat Its Cake?

Yao-Chun Chan, Mingchen Li, Samet Oymak

Generalization Guarantees for Neural Networks via Harnessing the Low-rank Structure of the Jacobian

Samet Oymak, Zalan Fabian, Mingchen Li +1

MS-DFTVNet:A Long-Term Time Series Prediction Method Based on Multi-Scale Deformable Convolution

Chenghan Li, Mingchen Li, Yipu Liao +1

How far is Language Model from 100% Few-shot Named Entity Recognition in Medical Domain

Mingchen Li, Rui Zhang

On the Power of Convolution Augmented Transformer

Mingchen Li, Xuechen Zhang, Yixiao Huang +1

Selective Attention: Enhancing Transformer through Principled Context Control

Xuechen Zhang, Xiangyu Chang, Mingchen Li +3

FedNest: Federated Bilevel, Minimax, and Compositional Optimization

Davoud Ataee Tarzanagh, Mingchen Li, Christos Thrampoulidis +1

TxSum: User-Centered Ethereum Transaction Understanding with Micro-Level Semantic Grounding

Zifan Peng, Jingyi Zheng, Yule Liu +8

Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models

Yang Tan, Mingchen Li, Bingxin Zhou +7

Cross-Platform Short-Video Diplomacy: Topic and Sentiment Analysis of China-US Relations on Douyin and TikTok

Zheng Wei, Mingchen Li, Junxiang Liao +5

Hollywood Town: Long-Video Generation via Cross-Modal Multi-Agent Orchestration

Zheng Wei, Mingchen Li, Zeqian Zhang +6

A Condensed Transition Graph Framework for Zero-shot Link Prediction with Large Language Models

Mingchen Li, Chen Ling, Rui Zhang +1

Unsafe LLM-Based Search: Quantitative Analysis and Mitigation of Safety Risks in AI Web Search

Zeren Luo, Zifan Peng, Yule Liu +4